Open Access
Table 3
Identified microRNAs affecting CSD1 gene using psRNATarget software with the expected value 4.
| miRNA_Acc. | Target_Acc. | Expectation | Target_start | Target_end | miRNA_aligned_fragment | Target_aligned_fragment | Inhibition | Target_Desc. |
|---|---|---|---|---|---|---|---|---|
| osa-miR3979-5p | XM_013861011.2 | 3 | 637 | 656 | UCUCUCUCUCCCUUGAAGGC | CUUUUCGAGGAAGAGAGAGA | Translation | CSD1 |
| ath-miR8167a | XM_013861011.2 | 3.5 | 282 | 303 | AGAUGUGGAGAUCGUGGGGAUG | GGUCCCCAUGGUUUCCAUGUCC | Cleavage | CSD1 |
| ath-miR8167b | XM_013861011.2 | 3.5 | 282 | 303 | AGAUGUGGAGAUCGUGGGGAUG | GGUCCCCAUGGUUUCCAUGUCC | Cleavage | CSD1 |
| ath-miR8167c | XM_013861011.2 | 3.5 | 282 | 303 | AGAUGUGGAGAUCGUGGGGAUG | GGUCCCCAUGGUUUCCAUGUCC | Cleavage | CSD1 |
| ath-miR8167d | XM_013861011.2 | 3.5 | 282 | 303 | AGAUGUGGAGAUCGUGGGGAUG | GGUCCCCAUGGUUUCCAUGUCC | Cleavage | CSD1 |
| ath-miR8167e | XM_013861011.2 | 3.5 | 282 | 303 | AGAUGUGGAGAUCGUGGGGAUG | GGUCCCCAUGGUUUCCAUGUCC | Cleavage | CSD1 |
| ath-miR8167f | XM_013861011.2 | 3.5 | 282 | 303 | AGAUGUGGAGAUCGUGGGGAUG | GGUCCCCAUGGUUUCCAUGUCC | Cleavage | CSD1 |
| stu-miR398b-3p | XM_013861011.2 | 3.5 | 129 | 149 | UUGUGUUCUCAGGUCACCCCU | AGGGGUACCCUGAGAUCACAA | Cleavage | CSD1 |
| stu-miR8002-3p | XM_013861011.2 | 3.5 | 419 | 442 | AUUCCAUUAUUAUCAAGAAAAAAG | CAUCAUUGUUGGUGAUGAUGGAAC | Cleavage | CSD1 |
| ahy-miR398 | XM_013861011.2 | 4 | 129 | 148 | UGUGUUCUCAGGUCACCCCU | AGGGGUACCCUGAGAUCACA | Cleavage | CSD1 |
| aly-miR398a-3p | XM_013861011.2 | 4 | 128 | 148 | UGUGUUCUCAGGUCACCCCUU | AAGGGGUACCCUGAGAUCACA | Cleavage | CSD1 |
| aly-miR398b-3p | XM_013861011.2 | 4 | 128 | 148 | UGUGUUCUCAGGUCACCCCUG | AAGGGGUACCCUGAGAUCACA | Cleavage | CSD1 |
| aqc-miR398a | XM_013861011.2 | 4 | 128 | 148 | UGUGUUCUCAGGUCACCCCUU | AAGGGGUACCCUGAGAUCACA | Cleavage | CSD1 |
| ath-miR398a-3p | XM_013861011.2 | 4 | 128 | 148 | UGUGUUCUCAGGUCACCCCUU | AAGGGGUACCCUGAGAUCACA | Cleavage | CSD1 |
| ath-miR398b-3p | XM_013861011.2 | 4 | 128 | 148 | UGUGUUCUCAGGUCACCCCUG | AAGGGGUACCCUGAGAUCACA | Cleavage | CSD1 |
| ath-miR398c-3p | XM_013861011.2 | 4 | 128 | 148 | UGUGUUCUCAGGUCACCCCUG | AAGGGGUACCCUGAGAUCACA | Cleavage | CSD1 |
| bdi-miR7777-3p.2 | XM_013861011.2 | 4 | 97 | 117 | UGAGAUGGUGUCUGUUGAAGG | CAUUUGAUAGCUACCAUCUUA | Translation | CSD1 |
| bol-miR398a-3p | XM_013861011.2 | 4 | 128 | 148 | UGUGUUCUCAGGUCACCCCUU | AAGGGGUACCCUGAGAUCACA | Cleavage | CSD1 |
| bra-miR398-3p | XM_013861011.2 | 4 | 128 | 148 | UGUGUUCUCAGGUCACCCCUG | AAGGGGUACCCUGAGAUCACA | Cleavage | CSD1 |
| cme-miR398b | XM_013861011.2 | 4 | 128 | 148 | UGUGUUCUCAGGUCACCCCUU | AAGGGGUACCCUGAGAUCACA | Cleavage | CSD1 |
| csi-miR398 | XM_013861011.2 | 4 | 128 | 148 | UGUGUUCUCAGGUCACCCCUU | AAGGGGUACCCUGAGAUCACA | Cleavage | CSD1 |
| ghr-miR398 | XM_013861011.2 | 4 | 128 | 148 | UGUGUUCUCAGGUCACCCCUU | AAGGGGUACCCUGAGAUCACA | Cleavage | CSD1 |
| gma-miR398a | XM_013861011.2 | 4 | 128 | 148 | UGUGUUCUCAGGUCACCCCUU | AAGGGGUACCCUGAGAUCACA | Cleavage | CSD1 |
| gma-miR398b | XM_013861011.2 | 4 | 128 | 148 | UGUGUUCUCAGGUCACCCCUU | AAGGGGUACCCUGAGAUCACA | Cleavage | CSD1 |
| gra-miR398 | XM_013861011.2 | 4 | 128 | 148 | UGUGUUCUCAGGUCACCCCUU | AAGGGGUACCCUGAGAUCACA | Cleavage | CSD1 |
| gra-miR7502d | XM_013861011.2 | 4 | 482 | 505 | CUUUUAACAGUAGAAUUUGAUGGA | UGGACCAAACUCUAUUGUAGGAAG | Cleavage | CSD1 |
| hme-miR-14 | XM_013861011.2 | 4 | 649 | 670 | UCAGUCUUUUUCUCUCUCCUAU | GAGAGAGAGAGAGAGAGAUGGA | Cleavage | CSD1 |
| mdm-miR398a | XM_013861011.2 | 4 | 128 | 148 | UGUGUUCUCAGGUCACCCCUU | AAGGGGUACCCUGAGAUCACA | Cleavage | CSD1 |
| mtr-miR398a-3p | XM_013861011.2 | 4 | 128 | 148 | UGUGUUCUCAGGUCACCCCUU | AAGGGGUACCCUGAGAUCACA | Cleavage | CSD1 |
| osa-miR398a | XM_013861011.2 | 4 | 128 | 148 | UGUGUUCUCAGGUCACCCCUU | AAGGGGUACCCUGAGAUCACA | Cleavage | CSD1 |
| ptc-miR398a | XM_013861011.2 | 4 | 128 | 148 | UGUGUUCUCAGGUCACCCCUU | AAGGGGUACCCUGAGAUCACA | Cleavage | CSD1 |
| rco-miR398a | XM_013861011.2 | 4 | 128 | 148 | UGUGUUCUCAGGUCACCCCUU | AAGGGGUACCCUGAGAUCACA | Cleavage | CSD1 |
| ssl-miR398 | XM_013861011.2 | 4 | 128 | 148 | UGUGUUCUCAGGUCACCCCUC | AAGGGGUACCCUGAGAUCACA | Cleavage | CSD1 |
| tcc-miR398b | XM_013861011.2 | 4 | 128 | 148 | UGUGUUCUCAGGUCACCCCUU | AAGGGGUACCCUGAGAUCACA | Cleavage | CSD1 |
| vvi-miR398a | XM_013861011.2 | 4 | 128 | 148 | UGUGUUCUCAGGUCACCCCUU | AAGGGGUACCCUGAGAUCACA | Cleavage | CSD1 |
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